Publications
Heim KC, Gamsby JJ, Hever MP, Freemantle SJ, Loros JJ, Dunlap JC, Spinella MJ
Retinoic acid mediates long-paced oscillations in retinoid receptor activity: evidence for a potential role for RIP140.
PLoS One 2009 Oct 28; 4(10):e7639
PMID: 19862326 [PubMed - in process]
Mehra A, Baker CL, Loros JJ, Dunlap JC
Post-translational modifications in circadian rhythms.
Trends Biochem Sci 2009 Oct; 34(10):483-90
PMID: 19740663 [PubMed - in process]
Gamsby JJ, Loros JJ, Dunlap JC
A phylogenetically conserved DNA damage response resets the circadian clock.
J Biol Rhythms 2009 Jun; 24(3):193-202
PMID: 19465696 [PubMed - indexed for MEDLINE]
Baker CL, Kettenbach AN, Loros JJ, Gerber SA, Dunlap JC
Quantitative proteomics reveals a dynamic interactome and phase-specific phosphorylation in the Neurospora circadian clock.
Mol Cell 2009 May 15; 34(3):354-63
PMID: 19450533 [PubMed - indexed for MEDLINE]
Mehra A, Shi M, Baker CL, Colot HV, Loros JJ, Dunlap JC
A role for casein kinase 2 in the mechanism underlying circadian temperature compensation.
Cell 2009 May 15; 137(4):749-60
PMID: 19450520 [PubMed - indexed for MEDLINE]
Larrondo LF, Colot HV, Baker CL, Loros JJ, Dunlap JC
Fungal functional genomics: tunable knockout-knock-in expression and tagging strategies.
Eukaryot Cell 2009 May; 8(5):800-4
PMID: 19286985 [PubMed - indexed for MEDLINE]
Chen CH, Ringelberg CS, Gross RH, Dunlap JC, Loros JJ
Genome-wide analysis of light-inducible responses reveals hierarchical light signalling in Neurospora.
EMBO J 2009 Apr 22; 28(8):1029-42
PMID: 19262566 [PubMed - indexed for MEDLINE]
Duffield GE, Watson NP, Mantani A, Peirson SN, Robles-Murguia M, Loros JJ, Israel MA, Dunlap JC
A role for Id2 in regulating photic entrainment of the mammalian circadian system.
Curr Biol 2009 Feb 24; 19(4):297-304
PMID: 19217292 [PubMed - indexed for MEDLINE]
Lambreghts R, Shi M, Belden WJ, Decaprio D, Park D, Henn MR, Galagan JE, Basturkmen M, Birren BW, Sachs MS, Dunlap JC, Loros JJ
A high-density single nucleotide polymorphism map for Neurospora crassa.
Genetics 2009 Feb; 181(2):767-81
PMID: 19015548 [PubMed - indexed for MEDLINE]
Hong CI, Ruoff P, Loros JJ, Dunlap JC
Closing the circadian negative feedback loop: FRQ-dependent clearance of WC-1 from the nucleus.
Genes Dev 2008 Nov 15; 22(22):3196-204
PMID: 18997062 [PubMed - indexed for MEDLINE]
Belden WJ, Dunlap JC
SIRT1 is a circadian deacetylase for core clock components.
Cell 2008 Jul 25; 134(2):212-4
PMID: 18662537 [PubMed - indexed for MEDLINE]
Dunlap JC
Salad days in the rhythms trade.
Genetics 2008 Jan; 178(1):1-13
PMID: 18202353 [PubMed - indexed for MEDLINE]
Shi M, Larrondo LF, Loros JJ, Dunlap JC
A developmental cycle masks output from the circadian oscillator under conditions of choline deficiency in Neurospora.
Proc Natl Acad Sci U S A 2007 Dec 11; 104(50):20102-7
PMID: 18056807 [PubMed - indexed for MEDLINE]
Diernfellner A, Colot HV, Dintsis O, Loros JJ, Dunlap JC, Brunner M
Long and short isoforms of Neurospora clock protein FRQ support temperature-compensated circadian rhythms.
FEBS Lett 2007 Dec 22; 581(30):5759-64
PMID: 18037381 [PubMed - indexed for MEDLINE]
Hong CI, Jolma IW, Loros JJ, Dunlap JC, Ruoff P
Simulating dark expressions and interactions of frq and wc-1 in the Neurospora circadian clock.
Biophys J 2008 Feb 15; 94(4):1221-32
PMID: 17965132 [PubMed - indexed for MEDLINE]
Gooch VD, Mehra A, Larrondo LF, Fox J, Touroutoutoudis M, Loros JJ, Dunlap JC
Fully codon-optimized luciferase uncovers novel temperature characteristics of the Neurospora clock.
Eukaryot Cell 2008 Jan; 7(1):28-37
PMID: 17766461 [PubMed - indexed for MEDLINE]
Belden WJ, Larrondo LF, Froehlich AC, Shi M, Chen CH, Loros JJ, Dunlap JC
The band mutation in Neurospora crassa is a dominant allele of ras-1 implicating RAS signaling in circadian output.
Genes Dev 2007 Jun 15; 21(12):1494-505
PMID: 17575051 [PubMed - indexed for MEDLINE]
Zoltowski BD, Schwerdtfeger C, Widom J, Loros JJ, Bilwes AM, Dunlap JC, Crane BR
Conformational switching in the fungal light sensor Vivid.
Science 2007 May 18; 316(5827):1054-7
PMID: 17510367 [PubMed - indexed for MEDLINE]
Nowrousian M, Frank S, Koers S, Strauch P, Weitner T, Ringelberg C, Dunlap JC, Loros JJ, Kuck U
The novel ER membrane protein PRO41 is essential for sexual development in the filamentous fungus Sordaria macrospora.
Mol Microbiol 2007 May; 64(4):923-37
PMID: 17501918 [PubMed - indexed for MEDLINE]
Dunlap JC, Borkovich KA, Henn MR, Turner GE, Sachs MS, Glass NL, McCluskey K, Plamann M, Galagan JE, Birren BW, Weiss RL, Townsend JP, Loros JJ, Nelson MA, Lambreghts R, Colot HV, Park G, Collopy P, Ringelberg C, Crew C, Litvinkova L, DeCaprio D, Hood HM, Curilla S, Shi M, Crawford M, Koerhsen M, Montgomery P, Larson L, Pearson M, Kasuga T, Tian C, Başturkmen M, Altamirano L, Xu J
Enabling a community to dissect an organism: overview of the Neurospora functional genomics project.
Adv Genet 2007; 57():49-96
PMID: 17352902 [PubMed - indexed for MEDLINE]
Belden WJ, Loros JJ, Dunlap JC
Execution of the circadian negative feedback loop in Neurospora requires the ATP-dependent chromatin-remodeling enzyme CLOCKSWITCH.
Mol Cell 2007 Feb 23; 25(4):587-600
PMID: 17317630 [PubMed - indexed for MEDLINE]
Dunlap JC, Loros JJ
How fungi keep time: circadian system in Neurospora and other fungi.
Curr Opin Microbiol 2006 Dec; 9(6):579-87
PMID: 17064954 [PubMed - indexed for MEDLINE]
Belden WJ, Loros JJ, Dunlap JC
CLOCK leaves its mark on histones.
Trends Biochem Sci 2006 Nov; 31(11):610-3
PMID: 17027273 [PubMed - indexed for MEDLINE]
Dunlap JC
Proteins in the Neurospora circadian clockworks.
J Biol Chem 2006 Sep 29; 281(39):28489-93
PMID: 16905532 [PubMed - indexed for MEDLINE]
Mehra A, Hong CI, Shi M, Loros JJ, Dunlap JC, Ruoff P
Circadian rhythmicity by autocatalysis.
PLoS Comput Biol 2006 Jul 28; 2(7):e96
PMID: 16863394 [PubMed - indexed for MEDLINE]
Pregueiro AM, Liu Q, Baker CL, Dunlap JC, Loros JJ
The Neurospora checkpoint kinase 2: a regulatory link between the circadian and cell cycles.
Science 2006 Aug 4; 313(5787):644-9
PMID: 16809488 [PubMed - indexed for MEDLINE]
Colot HV, Park G, Turner GE, Ringelberg C, Crew CM, Litvinkova L, Weiss RL, Borkovich KA, Dunlap JC
A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors.
Proc Natl Acad Sci U S A 2006 Jul 5; 103(27):10352-7
PMID: 16801547 [PubMed - indexed for MEDLINE]
Dunlap JC
Physiology. Running a clock requires quality time together.
Science 2006 Jan 13; 311(5758):184-6
PMID: 16410512 [PubMed - indexed for MEDLINE]
Froehlich AC, Noh B, Vierstra RD, Loros J, Dunlap JC
Genetic and molecular analysis of phytochromes from the filamentous fungus Neurospora crassa.
Eukaryot Cell 2005 Dec; 4(12):2140-52
PMID: 16339731 [PubMed - indexed for MEDLINE]
Ruoff P, Loros JJ, Dunlap JC
The relationship between FRQ-protein stability and temperature compensation in the Neurospora circadian clock.
Proc Natl Acad Sci U S A 2005 Dec 6; 102(49):17681-6
PMID: 16314576 [PubMed - indexed for MEDLINE]
Elvin M, Loros JJ, Dunlap JC, Heintzen C
The PAS/LOV protein VIVID supports a rapidly dampened daytime oscillator that facilitates entrainment of the Neurospora circadian clock.
Genes Dev 2005 Nov 1; 19(21):2593-605
PMID: 16264193 [PubMed - indexed for MEDLINE]
Colot HV, Loros JJ, Dunlap JC
Temperature-modulated alternative splicing and promoter use in the Circadian clock gene frequency.
Mol Biol Cell 2005 Dec; 16(12):5563-71
PMID: 16195340 [PubMed - indexed for MEDLINE]
Duffield G, Loros JJ, Dunlap JC
Analysis of circadian output rhythms of gene expression in Neurospora and mammalian cells in culture.
Methods Enzymol 2005; 393():315-41
PMID: 15817297 [PubMed - indexed for MEDLINE]
Dunlap JC, Loros JJ
Analysis of circadian rhythms in Neurospora: overview of assays and genetic and molecular biological manipulation.
Methods Enzymol 2005; 393():3-22
PMID: 15817284 [PubMed - indexed for MEDLINE]
Nowrousian M, Ringelberg C, Dunlap JC, Loros JJ, Kuck U
Cross-species microarray hybridization to identify developmentally regulated genes in the filamentous fungus Sordaria macrospora.
Mol Genet Genomics 2005 Apr; 273(2):137-49
PMID: 15778868 [PubMed - indexed for MEDLINE]
Pregueiro AM, Price-Lloyd N, Bell-Pedersen D, Heintzen C, Loros JJ, Dunlap JC
Assignment of an essential role for the Neurospora frequency gene in circadian entrainment to temperature cycles.
Proc Natl Acad Sci U S A 2005 Feb 8; 102(6):2210-5
PMID: 15677317 [PubMed - indexed for MEDLINE]
Dunlap JC, Loros JJ
The neurospora circadian system.
J Biol Rhythms 2004 Oct; 19(5):414-24
PMID: 15534321 [PubMed - indexed for MEDLINE]
Christensen MK, Falkeid G, Loros JJ, Dunlap JC, Lillo C, Ruoff P
A nitrate-induced frq-less oscillator in Neurospora crassa.
J Biol Rhythms 2004 Aug; 19(4):280-6
PMID: 15245647 [PubMed - indexed for MEDLINE]
Borkovich KA, Alex LA, Yarden O, Freitag M, Turner GE, Read ND, Seiler S, Bell-Pedersen D, Paietta J, Plesofsky N, Plamann M, Goodrich-Tanrikulu M, Schulte U, Mannhaupt G, Nargang FE, Radford A, Selitrennikoff C, Galagan JE, Dunlap JC, Loros JJ, Catcheside D, Inoue H, Aramayo R, Polymenis M, Selker EU, Sachs MS, Marzluf GA, Paulsen I, Davis R, Ebbole DJ, Zelter A, Kalkman ER, O'Rourke R, Bowring F, Yeadon J, Ishii C, Suzuki K, Sakai W, Pratt R
Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism.
Microbiol Mol Biol Rev 2004 Mar; 68(1):1-108
PMID: 15007097 [PubMed - indexed for MEDLINE]
Dunlap JC
Kinases and circadian clocks: per goes it alone.
Dev Cell 2004 Feb; 6(2):160-1
PMID: 14960268 [PubMed - indexed for MEDLINE]
Froehlich AC, Pregueiro A, Lee K, Denault D, Colot H, Nowrousian M, Loros JJ, Dunlap JC
The molecular workings of the Neurospora biological clock.
Novartis Found Symp 2003; 253():184-98; discussion 102-9, 198-202, 281-4
PMID: 14712922 [PubMed - indexed for MEDLINE]
Nowrousian M, Duffield GE, Loros JJ, Dunlap JC
The frequency gene is required for temperature-dependent regulation of many clock-controlled genes in Neurospora crassa.
Genetics 2003 Jul; 164(3):923-33
PMID: 12871904 [PubMed - indexed for MEDLINE]
Froehlich AC, Loros JJ, Dunlap JC
Rhythmic binding of a WHITE COLLAR-containing complex to the frequency promoter is inhibited by FREQUENCY.
Proc Natl Acad Sci U S A 2003 May 13; 100(10):5914-9
PMID: 12714686 [PubMed - indexed for MEDLINE]
Kramer C, Loros JJ, Dunlap JC, Crosthwaite SK
Role for antisense RNA in regulating circadian clock function in Neurospora crassa.
Nature 2003 Feb 27; 421(6926):948-52
PMID: 12607002 [PubMed - indexed for MEDLINE]
Lee K, Dunlap JC, Loros JJ
Roles for WHITE COLLAR-1 in circadian and general photoperception in Neurospora crassa.
Genetics 2003 Jan; 163(1):103-14
PMID: 12586700 [PubMed - indexed for MEDLINE]
Shinohara ML, Correa A, Bell-Pedersen D, Dunlap JC, Loros JJ
Neurospora clock-controlled gene 9 (ccg-9) encodes trehalose synthase: circadian regulation of stress responses and development.
Eukaryot Cell 2002 Feb; 1(1):33-43
PMID: 12455969 [PubMed - indexed for MEDLINE]
Wu CT, Dunlap JC
Homology effects: the difference between 1 and 2.
Adv Genet 2002; 46():xvii-xxiii
PMID: 12136788 [PubMed - indexed for MEDLINE]
Froehlich AC, Liu Y, Loros JJ, Dunlap JC
White Collar-1, a circadian blue light photoreceptor, binding to the frequency promoter.
Science 2002 Aug 2; 297(5582):815-9
PMID: 12098706 [PubMed - indexed for MEDLINE]
Duffield GE, Best JD, Meurers BH, Bittner A, Loros JJ, Dunlap JC
Circadian programs of transcriptional activation, signaling, and protein turnover revealed by microarray analysis of mammalian cells.
Curr Biol 2002 Apr 2; 12(7):551-7
PMID: 11937023 [PubMed - indexed for MEDLINE]
Collett MA, Garceau N, Dunlap JC, Loros JJ
Light and clock expression of the Neurospora clock gene frequency is differentially driven by but dependent on WHITE COLLAR-2.
Genetics 2002 Jan; 160(1):149-58
PMID: 11805052 [PubMed - indexed for MEDLINE]
Dunlap JC, Hastings JW, Shimomura O
Crossreactivity between the light-emitting systems of distantly related organisms: Novel type of light-emitting compound.
Proc Natl Acad Sci U S A 1980 Mar; 77(3):1394-1397
PMID: 16592787 [PubMed - as supplied by publisher]